Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs112191803 chr14:74364531 C/T 1.04E-5 177 25.4 27.75 10.43 KM Plot
PCPG rs112295850 chr5:13820882 C/T 6.37E-5 175 27.33 19.58 19.28 KM Plot
PCPG rs112302425 chr7:1080772 G/GGA 0.000299 172 26.57 25.87 20.13 KM Plot
PCPG rs112338110 chr7:51832891 G/T 0 177 25.77 18.2 2.93 KM Plot
PCPG rs112419286 chr18:74562794 G/A 6.87E-9 176 25.6 24.3 18.63 KM Plot
PCPG rs112423813 chr7:158669969 A/C 0 175 25.53 20.37 3.17 KM Plot
PCPG rs1124240 chr2:236193521 T/C 2.6E-7 174 25.97 24.7 3.07 KM Plot
PCPG rs112424984 chr5:171531416 G/GA 0.000114 177 25.87 22.3 17.12 KM Plot
PCPG rs112440207 chr3:52982643 A/AATT 6.56E-6 176 25.17 26.57 11.78 KM Plot
PCPG rs112463470 chr13:114165321 G/A 4.52E-12 177 24.1 29.95 3.32 KM Plot
PCPG rs112479028 chr8:53858476 G/C 0.000466 172 24.85 27.2 6.1 KM Plot
PCPG rs11248885 chr16:1667297 A/G 1.3E-11 174 25 30.93 4.52 KM Plot
PCPG rs11248887 chr16:1745337 T/C 0 176 25.47 19.3 2.93 KM Plot
PCPG rs11250229 chr10:1080289 G/A 1.49E-5 173 24.62 29.57 13.38 KM Plot
PCPG rs11250232 chr10:1082472 G/C 5.52E-6 174 24.53 27.6 13.38 KM Plot